Requirements and Installation

Requirements

Software

  • Mongo DB 3.2
  • Python 2.7.10+

Python Modules

  • pymongo
  • mongomock
  • h5py
  • numpy
  • pyBigWig
  • pysam

Installation

Directly from GitHub:

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git clone https://github.com/Multiscale-Genomics/mg-dm-api.git

Using pip:

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pip install git+https://github.com/Multiscale-Genomics/mg-dm-api.git

Documentation

To build the documentation:

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pip install Sphinx
pip install sphinx-autobuild
cd docs
make html